PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36026_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 157aa    MW: 18334 Da    PI: 10.3297
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36026_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer65.97.5e-21352357
                 ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                k  Y++C++NhA  lGg+a+DGC  f+p      + + ++C ACgCHRn+HR+  
  Cotton_A_36026_BGI-A2_v1.0  3 KEIYRDCQRNHARCLGGYAIDGCTQFIPF-----NNSKTHCKACGCHRNYHRKVL 52
                                678*************************9.....345689************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-9550IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-16551IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-15650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.916651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.43E-684143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-1485144IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-2287144IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEKEIYRDCQ RNHARCLGGY AIDGCTQFIP FNNSKTHCKA CGCHRNYHRK VLCRDLEQSP  60
NGKSFRSLRE AKRMARQQQS CCGVNMKQRK SKFSMGQREA MREFGEGLGW SMRNKDRPEE  120
INRFCERIGV SRIIFKTWLN NNKKCYFKGT SSANISS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467182.11e-105PREDICTED: zinc-finger homeodomain protein 14
TrEMBLA0A061EA713e-66A0A061EA71_THECC; Homeobox protein 32, putative
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.17e-35homeobox protein 32